Phylodynamics and infectious diseases


We have a formalism to unify the population inference from genetic sequences and infectious disease mathematical models in populations. In many recent studies, viral phylogenes were used to deduce epidemics' characteristics. Viral phylodynamics is defined as an investigation into how viral phylogenies can be shaped by epidemiological, immunological and evolutionary processes.


  • Virus phylogenies
  • Susceptible–infected (SI)
  • Susceptible–infected–susceptible (SIS)
  • Susceptible–infected–recovered (SIR)
  • Epidemiological parameters

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